Stem-loop bdi-MIR9487

Accession

MI0029136

Description

Brachypodium distachyon bdi-MIR9487 precursor miRNA

Sequence

acuuccuucugccauuuugcaaucgaacaaauccuuaguuaccucauaacguucggaccuuguugcugauacaaagcuuugauagcuuugcugucuagaauauuaucuuggagcuaaacacuuuguuucagcaguaagcaagguuugaacuaaggCCUUGUUCGAUUGCAAGAUGAcagguuaguuc
(((....((((.((((((((((((((((((..(((((((((.....))))(((((((((((((((((((.((((((....((((((...)))))).(((......)))((........)))))))).))))))....))))))))))))))))))..)))))))))))))))))).))))..)))..

Structure

--   uccu    c                  au     guuaccucauaac             ----      u      ---------------------cuuu      u 
  acu    ucug cauuuugcaaucgaacaa  ccuua             guucggaccuugu    ugcuga acaaag                         gauagc  
  |||    |||| ||||||||||||||||||  |||||             |||||||||||||    |||||| ||||||                         |||||| u
  uga    ggac GUAGAACGUUAGCUUGUU  ggaau             caaguuuggaacg    acgacu uguuuc                         cugucg  
cu   --uu    A                  CC     -------------             aaug      u      acaaaucgagguucuauuauaagau      u 

Annotation confidence Not enough data

Genome context

2: 25442100-25442286 [+]

Mature bdi-miR9487

• Accession: MIMAT0035494
• Description: Brachypodium distachyon bdi-miR9487 mature miRNA
• Sequence: 156 - CCUUGUUCGAUUGCAAGAUGA - 176
• Evidence: not_experimental

References

1. PubMed ID: 24367943
   Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
   Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
   Genome Biol (2013) 14:R145