Stem-loop bdi-MIR9488

Accession

MI0029137

Description

Brachypodium distachyon bdi-MIR9488 precursor miRNA

Sequence

cauUGAGGGCUAGGCUUUUAUGUAAcuacuguuugugguaauuguuuuucuaaaauccuaccuguuaauagcacugauugccccgcaaaauaucacuacacgucagaauugacaucagugcaacuugaaaccggauguuuuuugaaaagaacuaccaaaaccaguaguuauguaaaaccuauuccucaauguu
(((((((((.((((.((((((((((((((((.((.(((((.((.(((((..(((((((......((((..(((((((((((...)))..............((((....))))))))))))...))))....))))..)))..))))).)).))))).)).)))))))))))))))))))).)))))))))..

Structure

--         C    C                u  g     a  g     cu   --    uaccug    -ua        ugccccgcaaaauaucacuacac    g 
  cauUGAGGG UAGG UUUUAUGUAAcuacug uu uggua uu uuuuu  aaa  aucc      uuaa   gcacugau                       guca a
  ||||||||| |||| |||||||||||||||| || ||||| || |||||  |||  ||||      ||||   ||||||||                       ||||  
  guaacuccu aucc aaaauguauugaugac aa accau aa aaaag  uuu  uagg      aguu   cgugacua                       cagu a
uu         u    -                c  a     c  g     uu   ug    --ccaa    caa        -----------------------    u 

Annotation confidence Not enough data

Genome context

1: 50046751-50046943 [-]

Mature bdi-miR9488

• Accession: MIMAT0035495
• Description: Brachypodium distachyon bdi-miR9488 mature miRNA
• Sequence: 4 - UGAGGGCUAGGCUUUUAUGUAA - 25
• Evidence: not_experimental

References

1. PubMed ID: 24367943
   Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
   Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
   Genome Biol (2013) 14:R145