Stem-loop bdi-MIR9481b

Accession

MI0029141

Description

Brachypodium distachyon bdi-MIR9481b precursor miRNA

Sequence

798670 reads, 7844.0 reads per million, 19 experiments

ugcagauaCGGAGGUCAGGAAUUCUACUGguuuaacuaaauuucauucgacaagacaaaguaaaaaaacucuuucaauuaugucgaauguuuuuaguggaaaaUCAGUCGGAUUUCUCACCUUCaaaucugcauc
(((((((..((((((.((((((((.((((((((.((((((...(((((((((.((.((((..........))))...)).)))))))))..))))))...)))))))).)))))))).))))))..)))))))..

Structure

--       aC      C        U        --a      uuu         a  --c    uaaa 
  ugcagau  GGAGGU AGGAAUUC ACUGguuu   acuaaa   cauucgaca ga   aaag    a
  |||||||  |||||| |||||||| ||||||||   ||||||   ||||||||| ||   ||||     
  acgucua  CUUCCA UCUUUAGG UGACUaaa   ugauuu   guaagcugu uu   uuuc    a
cu       aa      C        C        agg      -uu         a  aac    ucaa 

Annotation confidence Medium

Genome context

4: 4929512-4929646 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bdi-MIR9481b

Mature bdi-miR9481b-5p

• Accession: MIMAT0057034
• Description: Brachypodium distachyon bdi-miR9481b-5p mature miRNA
• Sequence: 9 - CGGAGGUCAGGAAUUCUACUG - 29
• Evidence: experimental ; unknown

Mature bdi-miR9481b-3p

• Accession: MIMAT0035499
• Description: Brachypodium distachyon bdi-miR9481b-3p mature miRNA
• Sequence: 104 - UCAGUCGGAUUUCUCACCUUC - 124
• Evidence: not_experimental

References

1. PubMed ID: 24367943
   Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
   Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
   Genome Biol (2013) 14:R145