Stem-loop bdi-MIR9493

Accession

MI0029144

Description

Brachypodium distachyon bdi-MIR9493 precursor miRNA

Literature search

1 open access papers mention bdi-MIR9493
(1 sentences)

Sequence

3054 reads, 49.0 reads per million, 21 experiments

uuuauuauauacuccuuucauuucauaauucugAUGUAUCUAUUCCUAAAAguugucuauauacauguaauauuuugauAAGAAUUAUGAAACGAAGGGAGUAguauaaaaa
....(((((((((((((((.((((((((((((....((((.............(((......)))...........)))))))))))))))).))))))))).))))))...

Structure

uuua      -         a            gAUG    UAUUCCUAAAAgu   cu 
    uuauau acuccuuuc uuucauaauucu    UAUC             ugu  a
    |||||| ||||||||| ||||||||||||    ||||             |||   
    aauaug UGAGGGAAG AAAGUAUUAAGA    Auag             aca  u
-aaa      A         C            ----    --uuuuauaaugu   ua 

Annotation confidence Low

Genome context

4: 36753406-36753517 [-]

Mature bdi-miR9493-5p

• Accession: MIMAT0057035
• Description: Brachypodium distachyon bdi-miR9493-5p mature miRNA
• Sequence: 34 - AUGUAUCUAUUCCUAAAA - 51
• Evidence: experimental ; unknown

Mature bdi-miR9493-3p

• Accession: MIMAT0035502
• Description: Brachypodium distachyon bdi-miR9493-3p mature miRNA
• Sequence: 80 - AAGAAUUAUGAAACGAAGGGAGUA - 103
• Evidence: not_experimental

References

1. PubMed ID: 24367943
   Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
   Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
   Genome Biol (2013) 14:R145