Stem-loop bdi-MIR9494

Accession

MI0029145

Description

Brachypodium distachyon bdi-MIR9494 precursor miRNA

Sequence

13058 reads, 244.0 reads per million, 20 experiments

gggaagaggaCGGAGGGAGAGGAUGAUGAAGCcgcagcacggggcgcccgccggcggcggcggcggccacgggcacgggcggagggccccguuccugaccucguacgcgcucacgcucgccUUCAUCACCUUCGUCUCCGUCcucuacuuca
.((.((((((((((((..((((.((((((((.((.(((...((((((((((((....)))))).((...((((.((((((.....).))))).)))).))......))))))..))))).))))))))))))..)))))))))))).))...

Structure

--g  a            GA    A        C  c   acg      ccgccggcggcggcggc  cca    c     - g 
   gg agaggaCGGAGG  GAGG UGAUGAAG cg agc   gggcgc                 gg   cggg acggg c g
   || ||||||||||||  |||| |||||||| || |||   ||||||                 ||   |||| ||||| | a
   uc ucucCUGCCUCU  UUCC ACUACUUc gc ucg   cucgcg                 cc   gucc ugccc g g
acu  a            GC    -        c  -   -ca      -----------caugcu  --a    u     c g 

Annotation confidence High

Genome context

1: 2643359-2643510 [+]

Mature bdi-miR9494-5p

• Accession: MIMAT0057036
• Description: Brachypodium distachyon bdi-miR9494-5p mature miRNA
• Sequence: 11 - CGGAGGGAGAGGAUGAUGAAGC - 32
• Evidence: experimental ; unknown

Mature bdi-miR9494-3p

• Accession: MIMAT0035503
• Description: Brachypodium distachyon bdi-miR9494-3p mature miRNA
• Sequence: 122 - UUCAUCACCUUCGUCUCCGUC - 142
• Evidence: not_experimental

References

1. PubMed ID: 24367943
   Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
   Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
   Genome Biol (2013) 14:R145