Stem-loop bdi-MIR9499

Accession

MI0029150

Description

Brachypodium distachyon bdi-MIR9499 precursor miRNA

Sequence

524 reads, 6.0 reads per million, 20 experiments

ucgucuCCCUCGUCGACGCGGCAGCUCagaaggcgcgcgacgugccugcgcgugaGAUGCCGUGUCGGCGGGGACGaggacc
((.((((((.(((((((((((((.((((..(((((((...))))))).....)))).))))))))))))))))).)).))..

Structure

--  g  -    U             G    ---ga       c 
  uc uc uCCC CGUCGACGCGGCA CUCa     aggcgcg  
  || || |||| ||||||||||||| ||||     ||||||| g
  ag aG AGGG GCGGCUGUGCCGU Gagu     uccgugc  
cc  g  C    -             A    gcgcg       a 

Annotation confidence High

Genome context

4: 17265172-17265253 [-]

Mature bdi-miR9499-5p

• Accession: MIMAT0035508
• Description: Brachypodium distachyon bdi-miR9499-5p mature miRNA
• Sequence: 7 - CCCUCGUCGACGCGGCAGCUC - 27
• Evidence: not_experimental

Mature bdi-miR9499-3p

• Accession: MIMAT0057038
• Description: Brachypodium distachyon bdi-miR9499-3p mature miRNA
• Sequence: 56 - GAUGCCGUGUCGGCGGGGACG - 76
• Evidence: experimental ; unknown

References

1. PubMed ID: 24367943
   Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
   Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
   Genome Biol (2013) 14:R145