Stem-loop bdi-MIR159c

Accession

MI0029152

Description

Brachypodium distachyon bdi-MIR159c precursor miRNA

Sequence

uacccaaaacaacauuuagagaccauccaucacaagaaaaaagaguugccaaggggcagcgugcgacauacccugaucucguccucggucggcgccggcgccgcggggcugcuccugcugcugcugcuguacaUUUGGUUUGAAGGGGGCUCUGuuggguggc
(((((((.........(((((.((.(((.(((((((.....(((((.((..(((((((((..((((.((......)).)))).((((..(((((....))))))))))))))))))...)).))).)).....))))...))).)))))))))))))))))..

Structure

--       aacaacauu     a  a   a   ---    aaaaa  -   u  -ca         gugcgacauacccugaucucguc    gu     c 
  uacccaa         uagag cc ucc uca   caag     ag agu gc   aggggcagc                       cucg  cggcg c
  |||||||         ||||| || ||| |||   ||||     || ||| ||   |||||||||                       ||||  |||||  
  guggguu         GUCUC GG GGG AGU   GUUU     uc ucg cg   uccucgucg                       gggc  gccgc g
cg       ---------     -  -   A   UUG    acaug  g   u  ucg         -----------------------    --     g 

Annotation confidence Not enough data

Genome context

1: 302390-302552 [-]

Mature bdi-miR159c

• Accession: MIMAT0035510
• Description: Brachypodium distachyon bdi-miR159c mature miRNA
• Sequence: 134 - UUUGGUUUGAAGGGGGCUCUG - 154
• Evidence: not_experimental

References

1. PubMed ID: 24367943
   Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
   Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
   Genome Biol (2013) 14:R145