Stem-loop bdi-MIR444b

Accession

MI0029165

Description

Brachypodium distachyon bdi-MIR444b precursor miRNA

Literature search

1 open access papers mention bdi-MIR444b
(3 sentences)

Sequence

47616 reads, 843.0 reads per million, 21 experiments

gauucgcaugcggcggcaccaagcaugaGGCGACAACUGCAUUACUUGCugggaagacgcaaguaugacagcgaaacaugcauuacuugcgggaaaggcgcaaaacgaauagaagaucaucauacuuguggcuuucuugcaaguugUGCAGUUGCUGCCUCAAGCUUgcugccucccuuugccagagc
.....(((...((.((((.(((((.(((((((.(((((((((.((((((.((((((.(((((((((((..((.......)).....(((((.......)))))................))))))))))).)))))).)))))).))))))))).))))))).))))).)))).))...)))......

Structure

-gauuc   ugc  c    c     a       A         U      u      a           cagcgaaacaugcauuac     gg 
      gca   gg ggca caagc ugaGGCG CAACUGCAU ACUUGC gggaag cgcaaguauga                  uugcg  a
      |||   || |||| ||||| ||||||| ||||||||| |||||| |||||| |||||||||||                  |||||  a
      cgu   cc ccgu gUUCG ACUCCGU GUUGACGUg ugaacg ucuuuc guguucauacu                  aacgc  a
cgagac   uuc  u    c     A       C         u      u      g           --acuagaagauaagcaa     gg 

Annotation confidence Medium

Genome context

Unknown

Mature bdi-miR444b-5p

• Accession: MIMAT0057044
• Description: Brachypodium distachyon bdi-miR444b-5p mature miRNA
• Sequence: 29 - GGCGACAACUGCAUUACUUGC - 49
• Evidence: experimental ; unknown

Mature bdi-miR444b-3p

• Accession: MIMAT0035523
• Description: Brachypodium distachyon bdi-miR444b-3p mature miRNA
• Sequence: 147 - UGCAGUUGCUGCCUCAAGCUU - 167
• Evidence: not_experimental

References

1. PubMed ID: 24367943
   Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
   Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
   Genome Biol (2013) 14:R145