Stem-loop bdi-MIR444c

Accession

MI0029166

Description

Brachypodium distachyon bdi-MIR444c precursor miRNA

Literature search

1 open access papers mention bdi-MIR444c
(3 sentences)

Sequence

648893 reads, 10591.0 reads per million, 21 experiments

uugaugcaaggggUGGUGACAAACUUGAGGCAGCaacugcauaucuugcaagaaaauuggguuucagagcauaccgaugauuuucuugcaaguugUGCAGUUGUUGUCUCAAGCUUgcugccucccuuugccaa
.....((((((((.((((.(((.((((((((((((((((((((.((((((((((((((.(((..........)))...)))))))))))))).)))))))))))))))))))).))).)))).))))))))...

Structure

uugau        U    A   A                    u              --g   uuca 
     gcaagggg GGUG CAA CUUGAGGCAGCaacugcaua cuugcaagaaaauu   ggu    g
     |||||||| |||| ||| |||||||||||||||||||| ||||||||||||||   |||     
     cguuuccc ccgu gUU GAACUCUGUUGUUGACGUgu gaacguucuuuuag   cca    a
--aac        u    c   C                    u              uag   uacg 

Annotation confidence Medium

Genome context

Unknown

Mature bdi-miR444c-5p

• Accession: MIMAT0057045
• Description: Brachypodium distachyon bdi-miR444c-5p mature miRNA
• Sequence: 14 - UGGUGACAAACUUGAGGCAGC - 34
• Evidence: experimental ; unknown

Mature bdi-miR444c-3p

• Accession: MIMAT0035524
• Description: Brachypodium distachyon bdi-miR444c-3p mature miRNA
• Sequence: 96 - UGCAGUUGUUGUCUCAAGCUU - 116
• Evidence: not_experimental

References

1. PubMed ID: 24367943
   Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
   Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
   Genome Biol (2013) 14:R145