Stem-loop bdi-MIR444d

Accession

MI0029167

Description

Brachypodium distachyon bdi-MIR444d precursor miRNA

Literature search

1 open access papers mention bdi-MIR444d
(3 sentences)

Sequence

745582 reads, 11534.0 reads per million, 21 experiments

gcaaguggaggCGGCAAGCUAGAGGCAGCAACugcauaacgugcaagaaaaucguuucgggccauaccgaugauuuucuugcaaguugUGCAGUUGUUGUCUCAAGCUUgcugccucccuuugc
(((((.((((((((((((((.(((((((((((((((((((.(((((((((((((..((((......))))))))))))))))).))))))))))))))))))).)))))))))))))).)))))

Structure

     u              A                   g             uu    gc 
gcaag ggaggCGGCAAGCU GAGGCAGCAACugcauaac ugcaagaaaaucg  ucgg  c
||||| |||||||||||||| ||||||||||||||||||| |||||||||||||  ||||   
cguuu ccuccgucgUUCGA CUCUGUUGUUGACGUguug acguucuuuuagu  agcc  a
     c              A                   a             --    au 

Annotation confidence Medium

Genome context

Unknown

Mature bdi-miR444d-5p

• Accession: MIMAT0057046
• Description: Brachypodium distachyon bdi-miR444d-5p mature miRNA
• Sequence: 12 - CGGCAAGCUAGAGGCAGCAAC - 32
• Evidence: experimental ; unknown

Mature bdi-miR444d-3p

• Accession: MIMAT0035525
• Description: Brachypodium distachyon bdi-miR444d-3p mature miRNA
• Sequence: 89 - UGCAGUUGUUGUCUCAAGCUU - 109
• Evidence: not_experimental

References

1. PubMed ID: 24367943
   Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
   Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
   Genome Biol (2013) 14:R145