Accession
MI0029168
Description
Brachypodium distachyon
bdi-MIR530a precursor miRNA
Sequence
2178
reads,
45.0
reads per million, 16 experiments
gaagaauggugugauuuuugcUGCAUUUGCACCUGCACCUACaucgaaggaacgauagaagcacugcaccuauuucaucaauuaucgucaugcaggcuucuugauccuccuccuaagcugcuuAGGUGCAGUGGCAGAUGCAGguguaucacaggaauuuuc
(((((....((((((.....((((((((((..(((((((((((.(..((((..(((((((((.(((((......................)))))))))))..)))....))))..).))..)))))))))..))))))))))....))))))....)))))
(((((....((((((.....((((((((((..(((((((((((.(..((((..(((((((((.(((((......................)))))))))))..)))....))))..).))..)))))))))..))))))))))....))))))....)))))
Structure
augg uuuug AC -- u ga --ac -- a ccuauuucau
gaaga ugugau cUGCAUUUGC CUGCACCUA Ca c agga gau agaagc cugca c
||||| |||||| |||||||||| ||||||||| || | |||| ||| |||||| |||||
cuuuu acacua GACGUAGACG GACGUGGAu gu g uccu cua ucuucg gacgu a
aagg -ugug GU uc c aa ccuc gu - acugcuauua
Annotation confidence
High
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Genome context
5: 16956517-16956678 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bdi-MIR530a
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature bdi-miR530a-5p
| Accession | MIMAT0035526 |
| Description | Brachypodium distachyon bdi-miR530a-5p mature miRNA |
| Sequence | 22 - UGCAUUUGCACCUGCACCUAC - 42 |
| Evidence | not_experimental |
Mature bdi-miR530a-3p
| Accession | MIMAT0057047 |
| Description | Brachypodium distachyon bdi-miR530a-3p mature miRNA |
| Sequence | 124 - AGGUGCAGUGGCAGAUGCAG - 143 |
| Evidence |
experimental
unknown |
References
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