Stem-loop bdi-MIR530b

Accession

MI0029169

Description

Brachypodium distachyon bdi-MIR530b precursor miRNA

Sequence

gugauagugauugagcUGCAUUUGCACCUGCACCUACcaaggaauggucuacauucaccuugcauaugaugcauguaagagcaaggauguccuugacccucucgcucuuccuaggugaguaggugcaguggcagaugcagcucaaucacaagcac
(((...(((((((((((((((((((..((((((((((....(((((.....)))))..(((((((.......)))))))..(((((....)))))......((((.((....))))))))))))))))..)))))))))))))))))))...)))

Structure

   aua                   AC          ------------------caaggaauggucuacauucac       au 
gug   gugauugagcUGCAUUUGC  CUGCACCUAC                                       cuugcau  g
|||   |||||||||||||||||||  ||||||||||                                       |||||||  a
cac   cacuaacucgacguagacg  gacguggaug                                       gaaugua  u
   gaa                   gu          aguggauccuucucgcucucccaguuccuguaggaacga       cg 

Annotation confidence Not enough data

Genome context

5: 16956889-16957043 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bdi-MIR530b

Mature bdi-miR530b

• Accession: MIMAT0035527
• Description: Brachypodium distachyon bdi-miR530b mature miRNA
• Sequence: 17 - UGCAUUUGCACCUGCACCUAC - 37
• Evidence: not_experimental

References

1. PubMed ID: 24367943
   Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
   Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
   Genome Biol (2013) 14:R145