Stem-loop bdi-MIR531

Accession

MI0029170

Description

Brachypodium distachyon bdi-MIR531 precursor miRNA

Sequence

3607 reads, 50.0 reads per million, 21 experiments

cgguggcGAUGCUCGCCGGAGCAGCGUGCUGggucuuagccCCGCACGCUCCUUCGUCGAGUUuggcuaccguc
(((((((.(.(((((.(((((.(((((((.((((....)))).))))))).))))).))))).).)))))))..

Structure

--       G U     C     C       U    c 
  cgguggc A GCUCG CGGAG AGCGUGC Gggu u
  ||||||| | ||||| ||||| ||||||| ||||  
  gccaucg u UGAGC GCUUC UCGCACG Cccg u
cu       g U     U     C       C    a 

Annotation confidence Medium

Genome context

2: 9542419-9542492 [+]

Mature bdi-miR531-5p

• Accession: MIMAT0035528
• Description: Brachypodium distachyon bdi-miR531-5p mature miRNA
• Sequence: 8 - GAUGCUCGCCGGAGCAGCGUGCUG - 31
• Evidence: not_experimental

Mature bdi-miR531-3p

• Accession: MIMAT0057049
• Description: Brachypodium distachyon bdi-miR531-3p mature miRNA
• Sequence: 42 - CCGCACGCUCCUUCGUCGAGUU - 63
• Evidence: experimental ; unknown

References

1. PubMed ID: 24367943
   Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
   Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
   Genome Biol (2013) 14:R145