Stem-loop bdi-MIR1432

Accession

MI0029172

Description

Brachypodium distachyon bdi-MIR1432 precursor miRNA

Sequence

30349 reads, 589.0 reads per million, 21 experiments

uccuuugUUCAGGAGAGAUGACACCGACAucgaucugaugggucggcucaguucaauuaguuacuaggccauguguguccauccgcuuggagUGGGUGUCAUCUCCCCUGAACAUaggacg
((((.((((((((.(((((((((((.((.((((.(.((((((.(((((.(((..........))).))))......))))))).).)))).)).))))))))))).)))))))).))))..

Structure

--    u        A           G  A    u u      u ------    c   ucaa 
  uccu ugUUCAGG GAGAUGACACC AC ucga c gauggg c      ggcu agu    u
  |||| |||||||| ||||||||||| || |||| | |||||| |      |||| |||     
  agga ACAAGUCC CUCUACUGUGG Ug gguu g cuaccu g      ccgg uca    u
gc    U        C           G  a    c c      - ugugua    a   uuga 

Annotation confidence High

Genome context

1: 18961246-18961366 [+]

Mature bdi-miR1432-5p

• Accession: MIMAT0035530
• Description: Brachypodium distachyon bdi-miR1432-5p mature miRNA
• Sequence: 8 - UUCAGGAGAGAUGACACCGACA - 29
• Evidence: not_experimental

Mature bdi-miR1432-3p

• Accession: MIMAT0057050
• Description: Brachypodium distachyon bdi-miR1432-3p mature miRNA
• Sequence: 93 - UGGGUGUCAUCUCCCCUGAACAU - 115
• Evidence: experimental ; unknown

References

1. PubMed ID: 24367943
   Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
   Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
   Genome Biol (2013) 14:R145