Stem-loop bdi-MIR2275a

Accession

MI0029175

Description

Brachypodium distachyon bdi-MIR2275a precursor miRNA

Literature search

2 open access papers mention bdi-MIR2275a
(6 sentences)

Sequence

188 reads, 2.0 reads per million, 20 experiments

gagaauuuggcagaugaauuugAGUGUUGGAUGGGACCAAAUCuuaccgcagggugauacaagaUUUGGUUUCCUCCAAUGUCUCAuguucaugugucagaugcug
.((.((((((((.((((((.(((((((((((.((((((((((((((((....)))).....)))))))))))).))))))).)))).)))))).)))))))).)).

Structure

g  a        g      u    -       U            -----    g 
 ag auuuggca augaau ugAG UGUUGGA GGGACCAAAUCu     uacc c
 || |||||||| |||||| |||| ||||||| ||||||||||||     ||||  
 uc uagacugu uacuug ACUC GUAACCU CUUUGGUUUaga     gugg a
g  g        g      u    U       C            acaua    g 

Annotation confidence High

Genome context

3: 12513972-12514077 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bdi-MIR2275a

Mature bdi-miR2275a-5p

• Accession: MIMAT0057051
• Description: Brachypodium distachyon bdi-miR2275a-5p mature miRNA
• Sequence: 23 - AGUGUUGGAUGGGACCAAAUC - 43
• Evidence: experimental ; unknown

Mature bdi-miR2275a-3p

• Accession: MIMAT0035533
• Description: Brachypodium distachyon bdi-miR2275a-3p mature miRNA
• Sequence: 65 - UUUGGUUUCCUCCAAUGUCUCA - 86
• Evidence: not_experimental

References

1. PubMed ID: 24367943
   Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
   Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
   Genome Biol (2013) 14:R145