Stem-loop bdi-MIR5171b

Accession

MI0029179

Description

Brachypodium distachyon bdi-MIR5171b precursor miRNA

Literature search

1 open access papers mention bdi-MIR5171b
(1 sentences)

Sequence

8504 reads, 87.0 reads per million, 21 experiments

uacuugugcacaacauggcguuuuacucccuccgugacauAUUAAGUGACGAAAUAUUACAcauaucuagaagauuuuugguauagauagauacaucuauauuuggacagauuugagucACUUAAUAUGGGACGGAAGAAuuacaaaacaagauguuaaaucuguacaauccuauccguuuuuagauaaucaug
...(((((((.(((((...(((((......(((((..(((((((((((((.((((....((...((((...))))...))((((((((......))))))))........))))..)))))))))))))..)))))........)))))...))))).....)))))))...((((........))))......

Structure

----------------------uac       ----c     ggc     --acuccc     ga             -G    --------------------------AUUA  cau    a 
                         uugugca     aacau   guuuu        uccgu  cauAUUAAGUGAC  AAAU                              CA   aucu  
                         |||||||     |||||   |||||        |||||  |||||||||||||  ||||                              ||   |||| g
                         aacaugu     uugua   caaaa        AGGCA  GUAUAAUUCAcug  uuua                              gu   uaga  
guacuaauagauuuuugccuauccu       cuaaa     gaa     cauuAAGA     GG             ag    gacagguuuauaucuacauagauagauaug  uuu    a 

Annotation confidence Low

Genome context

2: 11086341-11086534 [-]

Mature bdi-miR5171b-5p

• Accession: MIMAT0057052
• Description: Brachypodium distachyon bdi-miR5171b-5p mature miRNA
• Sequence: 41 - AUUAAGUGACGAAAUAUUACA - 61
• Evidence: experimental ; unknown

Mature bdi-miR5171b-3p

• Accession: MIMAT0035537
• Description: Brachypodium distachyon bdi-miR5171b-3p mature miRNA
• Sequence: 120 - ACUUAAUAUGGGACGGAAGAA - 140
• Evidence: not_experimental

References

1. PubMed ID: 24367943
   Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
   Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
   Genome Biol (2013) 14:R145