Stem-loop bdi-MIR5174f

Accession

MI0029180

Description

Brachypodium distachyon bdi-MIR5174f precursor miRNA

Literature search

1 open access papers mention bdi-MIR5174f
(4 sentences)

Sequence

700 reads, 8.0 reads per million, 21 experiments

uucccuccguuucAUAAAGGUUGGCACGGuugugaacuaccucuaauucaaagccgugccaaccuUUACGAAACGGAGGGAGUA
(((((((((((((.(((((((((((((((((.((((.((....)).)))).))))))))))))))))).)))))))))))))..

Structure

--             A                 g    c  c 
  uucccuccguuuc UAAAGGUUGGCACGGuu ugaa ua c
  ||||||||||||| ||||||||||||||||| |||| ||  
  GAGGGAGGCAAAG AUUuccaaccgugccga acuu au u
AU             C                 a    a  c 

Annotation confidence Low

Genome context

3: 18576851-18576934 [-]

Mature bdi-miR5174f-5p

• Accession: MIMAT0035538
• Description: Brachypodium distachyon bdi-miR5174f-5p mature miRNA
• Sequence: 14 - AUAAAGGUUGGCACGG - 29
• Evidence: not_experimental

Mature bdi-miR5174f-3p

• Accession: MIMAT0057053
• Description: Brachypodium distachyon bdi-miR5174f-3p mature miRNA
• Sequence: 66 - UUACGAAACGGAGGGAGUA - 84
• Evidence: experimental ; unknown

References

1. PubMed ID: 24367943
   Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
   Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
   Genome Biol (2013) 14:R145