Stem-loop bdi-MIR5281b

Accession

MI0029181

Description

Brachypodium distachyon bdi-MIR5281b precursor miRNA

Sequence

acuacucucuuccuuaguuuuauaagauguucuggcuuugucauauaccaagcucuacaaaccuugaccaagauaauaguaaaucgaccgacaucuacaacuuuauaccaagcuuuauuaaaucuauugcaauagauaucuuauauuuauuugagaaguugcugauauuaguauaaacuuugagagguuugacuuaauauaaaacucaaaacuauaacaUCUUAUAAAUAGGAACGGAGGuaguag
(((((.((((((((....(((((((((((((.(((.((((...((((..(((.....((((((((..(.(((...(((.(((((((..((((.(((.((............((..((.......))..))(((((((((...)))))))))))))).)))).)))).))).)))...))).).)))))))).)))..)))).....)))).))).))))))))))))).))))..)))))))))..

Structure

--     u    --    uagu             c   c    --uca    cc   cucua        ga c   aua   g   -    ac    a   a  acuuuauaccaagcuuuauuaaaucuauugc         c 
  acuac cucu  uccu    uuuauaagauguu ugg uuug     uaua  aag     caaaccuu  c aag   aua uaa aucg  cgac ucu ca                               aauagauau  
  ||||| ||||  ||||    ||||||||||||| ||| ||||     ||||  |||     ||||||||  | |||   ||| ||| ||||  |||| ||| ||                               ||||||||| u
  ugauG GAGG  AGGA    AAAUAUUCUacaa auc aaac     auau  uuc     guuuggag  g uuc   uau auu uagu  guug aga gu                               uuauuuaua  
ga     -    CA    ---U             u   a    ucaaa    aa   ----a        -a u   aaa   g   a    -c    a   -  -------------------------------         u 

Annotation confidence Not enough data

Genome context

3: 48737185-48737430 [-]

Mature bdi-miR5281b

• Accession: MIMAT0035539
• Description: Brachypodium distachyon bdi-miR5281b mature miRNA
• Sequence: 220 - UCUUAUAAAUAGGAACGGAGG - 240
• Evidence: not_experimental

References

1. PubMed ID: 24367943
   Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
   Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
   Genome Biol (2013) 14:R145