Stem-loop gga-mir-190b

Accession

MI0029340

Description

Gallus gallus gga-mir-190b precursor miRNA

Literature search

3 open access papers mention gga-mir-190b
(3 sentences)

Sequence

1050 reads, 20 reads per million, 5 experiments

cccugccucugucUGAUAUGUUUGAUAUUAGGUUGuuugauuggaaaccaaCUAAAUAUCAAACAUAUUCUUAcagcggcagggc
(((((((.((((..(((((((((((((((.((((((((......))).))))).))))))))))))).))..)))).))))))).

Structure

-       u    cU  -             A     -   ga 
 cccugcc cugu  GA UAUGUUUGAUAUU GGUUG uuu  u
 ||||||| ||||  || ||||||||||||| ||||| |||   
 gggacgg gacA  CU AUACAAACUAUAA UCaac aaa  u
c       c    UU  U             A     c   gg 

Annotation confidence Not enough data

Genome context

chr25: 2120322-2120406 [-]

Mature gga-miR-190b-5p

• Accession: MIMAT0037546
• Description: Gallus gallus gga-miR-190b-5p mature miRNA
• Sequence: 14 - UGAUAUGUUUGAUAUUAGGUUG - 35
• Evidence: experimental ; Illumina [2]

Mature gga-miR-190b-3p

• Accession: MIMAT0037547
• Description: Gallus gallus gga-miR-190b-3p mature miRNA
• Sequence: 52 - CUAAAUAUCAAACAUAUUCUUA - 73
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196


2. PubMed ID: 29079676
   Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation
   "Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H"
   Genome Res (2017) 12:1961-1973