Stem-loop gga-mir-210a

Accession

MI0029342

Description

Gallus gallus gga-mir-210a precursor miRNA

Literature search

4 open access papers mention gga-mir-210a
(51 sentences)

Sequence

5500 reads, 70 reads per million, 5 experiments

caggagcaggugAGCCACUGACUAACGCACAUUGugcucucggcgacuccaCUGUGCGUGUGACAGCGGCUAAccugcuccucggac
.((((((((((.((((.(((.(..(((((((.((((((...))))....)).)))))))..).))).)))).)))))))))).....

Structure

----c          g    A   A UA       U  ----    c 
     aggagcaggu AGCC CUG C  ACGCACA UG    ugcu  
     |||||||||| |||| ||| |  ||||||| ||    |||| u
     uccucguccA UCGG GAC G  UGCGUGU ac    gcgg  
caggc          A    C   A UG       C  cuca    c 

Annotation confidence High

Genome context

chr5: 15887066-15887152 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-210a

Mature gga-miR-210a-5p

• Accession: MIMAT0037549
• Description: Gallus gallus gga-miR-210a-5p mature miRNA
• Sequence: 13 - AGCCACUGACUAACGCACAUUG - 34
• Evidence: experimental ; Illumina [2]

Mature gga-miR-210a-3p

• Accession: MIMAT0037550
• Description: Gallus gallus gga-miR-210a-3p mature miRNA
• Sequence: 52 - CUGUGCGUGUGACAGCGGCUAA - 73
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196


2. PubMed ID: 29079676
   Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation
   "Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H"
   Genome Res (2017) 12:1961-1973