Stem-loop gga-mir-1388a

Accession

MI0029345

Description

Gallus gallus gga-mir-1388a precursor miRNA

Literature search

1 open access papers mention gga-mir-1388a
(1 sentences)

Sequence

37837 reads, 506 reads per million, 5 experiments

gcgaggggcaccucgAGGACUGUCUAACCUGAGAAUGgugaaacaugagggucaAUCUCAGGUUCGUCAGCCCAUGagaugccuucuc
..((((((((.((((.((.(((.(.(((((((((....(((..(....)..))).))))))))).).))).)).)))).)))).))))

Structure

gc    -    c    A  A   U U         AUGg   aa a 
  gagg ggca cucg GG CUG C AACCUGAGA    uga  c u
  |||| |||| |||| || ||| | |||||||||    |||  |  
  cucu ccgu gaGU CC GAC G UUGGACUCU    acu  g g
--    u    a    A  C   U C         ---A   gg a 

Annotation confidence High

Genome context

chr20: 9710454-9710541 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-1388a

Mature gga-miR-1388a-5p

• Accession: MIMAT0037555
• Description: Gallus gallus gga-miR-1388a-5p mature miRNA
• Sequence: 16 - AGGACUGUCUAACCUGAGAAUG - 37
• Evidence: experimental ; Illumina [2]

Mature gga-miR-1388a-3p

• Accession: MIMAT0037556
• Description: Gallus gallus gga-miR-1388a-3p mature miRNA
• Sequence: 55 - AUCUCAGGUUCGUCAGCCCAUG - 76
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196


2. PubMed ID: 29079676
   Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation
   "Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H"
   Genome Res (2017) 12:1961-1973