miRBase entry: xtr-mir-454

Stem-loop xtr-mir-454

Accession

MI0029367

Description

Xenopus tropicalis xtr-mir-454 precursor miRNA

Sequence

agugcccucagccuuaaggaagugacccuaucaauauugccucugcuuuugugcucggaguagUAGUGCAAUAUUGCUUAUAGGGUcuuuuccuugagacacc
............((((((((((.((((((((((((((((((((((((((.......))))))).)).)))))))))...)))))))).)))))))))).....

Structure

agugcccucagc          u        ---         -  -       ug 
            cuuaaggaag gacccuau   caauauugc cu cugcuuu  u
            |||||||||| ||||||||   ||||||||| || |||||||  g
            gaguuccuuu cUGGGAUA   GUUAUAACG GA gaugagg  c
-------ccaca          u        UUC         U  U       cu

Annotation confidence Not enough data

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Genome context

chr1: 145396839-145396941 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from xtr-mir-454

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature xtr-miR-454-3p

Accession	MIMAT0037590
Description	Xenopus tropicalis xtr-miR-454-3p mature miRNA
Sequence	64 - UAGUGCAAUAUUGCUUAUAGGGU - 86
Evidence	not_experimental

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196