Stem-loop cli-mir-9-1

Accession

MI0029900

Description

Columba livia cli-mir-9-1 precursor miRNA

Sequence

30434 reads, 177.0 reads per million, 26 experiments

ucagggguugguuguuaUCUUUGGUUAUCUAGCUGUAUGAguggugucgauucuucAUAAAGCUAGAUAACCGAAAGUaaaaauaaccccauu
...(((((((....((((.(((((((((((((((.((((((.(((....))).)))))).))))))))))))))).))))...)))))))...

Structure

uca       guug    C               G      u   g 
   gggguug    uuaU UUUGGUUAUCUAGCU UAUGAg ggu u
   |||||||    |||| ||||||||||||||| |||||| |||  
   ccccaau    aaUG AAGCCAAUAGAUCGA AUAcuu uua c
uua       -aaa    A               A      c   g 

Annotation confidence High

Genome context

25: 120585-120677 [-]

Mature cli-miR-9-5p

• Accession: MIMAT0038401
• Description: Columba livia cli-miR-9-5p mature miRNA
• Sequence: 18 - UCUUUGGUUAUCUAGCUGUAUGA - 40
• Evidence: experimental ; Illumina [1]

Mature cli-miR-9-3p

• Accession: MIMAT0038402
• Description: Columba livia cli-miR-9-3p mature miRNA
• Sequence: 57 - AUAAAGCUAGAUAACCGAAAGU - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196