Stem-loop tae-MIR396

Accession

MI0030381

Description

Triticum aestivum tae-MIR396 precursor miRNA

Literature search

27 open access papers mention tae-MIR396
(96 sentences)

Sequence

1883269 reads, 9273.0 reads per million, 227 experiments

ggcuuucuugAACUGUGAACUCGCGGGGAUGgggauucccuggauuguggcgcuccugccuucucuucggccgucUCCGCCUGUUGAUGGUUCAAGAaagccc
((((((((((((((((.(((..((((((((((.......(((((..(.(((......)))..)..)))))))))))))))..))).)))))))))))))))).

Structure

-                G   UC          ggauucc     uu -u   gc 
 ggcuuucuugAACUGU AAC  GCGGGGAUGg       cugga  g  ggc  u
 |||||||||||||||| |||  ||||||||||       |||||  |  |||   
 ccgaaAGAACUUGGUA UUG  CGCCUcugcc       ggcuu  c  ccg  c
c                G   UC          -------     cu uu   uc 

Annotation confidence Medium

Genome context

Unknown

Mature tae-miR396-5p

• Accession: MIMAT0035771
• Description: Triticum aestivum tae-miR396-5p mature miRNA
• Sequence: 11 - AACUGUGAACUCGCGGGGAUG - 31
• Evidence: experimental ; Illumina [1]

Mature tae-miR396-3p

• Accession: MIMAT0056517
• Description: Triticum aestivum tae-miR396-3p mature miRNA
• Sequence: 76 - UCCGCCUGUUGAUGGUUCAAGA - 97
• Evidence: experimental ; unknown

References

1. PubMed ID: 24734873
   Identification and characterization of microRNAs in the flag leaf and developing seed of wheat (Triticum aestivum L.)
   Han R, Jian C, Lv J, Yan Y, Chi Q, Li Z, Wang Q, Zhang J, Liu X, Zhao H
   BMC Genomics (2014) 15:289