Stem-loop tae-MIR5062

Accession

MI0030391

Description

Triticum aestivum tae-MIR5062 precursor miRNA

Literature search

4 open access papers mention tae-MIR5062
(7 sentences)

Sequence

163876 reads, 1792.0 reads per million, 231 experiments

cguagcuucuUGAACCUUAGGGAACAGCCGCAUaacaccauuaacuugaaaaccacuuaucuuaucccaaaacugcuccuaccacaauauaagggguaaggaaugguuuuuaguuugugaggucauGCGGAUUUUUCACCAAGGUUCAAGugguuauc
.((((((.((((((((((.(((((.((((((((.((..(((.((((.((((((((.((.(((((((((........................))))))))))))))))))))))).)))..)).)))))).)).))).)))))))))))).)))))).

Structure

c      u          A  -   C  -      a  ac   u    u        c  a         aaaacugcucc 
 guagcu cuUGAACCUU GG GAA AG CCGCAU ac  cau aacu gaaaacca uu ucuuauccc           u
 |||||| |||||||||| || ||| || |||||| ||  ||| |||| |||||||| || |||||||||            
 uauugg GAACUUGGAA CC CUU UU GGCGua ug  gug uuga uuuuuggu aa ggaaugggg           a
c      u          -  A   U  A      c  ga   u    -        -  -         aauauaacacc 

Annotation confidence High

Genome context

Unknown

Mature tae-miR5062-5p

• Accession: MIMAT0035781
• Description: Triticum aestivum tae-miR5062-5p mature miRNA
• Sequence: 11 - UGAACCUUAGGGAACAGCCGCAU - 33
• Evidence: experimental ; Illumina [1]

Mature tae-miR5062-3p

• Accession: MIMAT0061486
• Description: Triticum aestivum tae-miR5062-3p mature miRNA
• Sequence: 127 - GCGGAUUUUUCACCAAGGUUCAAG - 150
• Evidence: experimental ; unknown

References

1. PubMed ID: 24734873
   Identification and characterization of microRNAs in the flag leaf and developing seed of wheat (Triticum aestivum L.)
   Han R, Jian C, Lv J, Yan Y, Chi Q, Li Z, Wang Q, Zhang J, Liu X, Zhao H
   BMC Genomics (2014) 15:289