Stem-loop tae-MIR1122c

Accession

MI0030398

Description

Triticum aestivum tae-MIR1122c precursor miRNA

Literature search

8 open access papers mention tae-MIR1122c
(40 sentences)

Sequence

32293 reads, 683.0 reads per million, 234 experiments

gugaacuacucucuccaucccAUAAUGUAAGACGUUUUUgcaaacuauauuagcuugcaaaaacgucuaAUAUUAUGGGACGGAGGGAGUaguaca
.((.((((((((((((.(((((((((((.((((((((((((((.(((...))).)))))))))))))).))))))))))).)))))))))))).))

Structure

g  a            a           A              a   u 
 ug acuacucucucc ucccAUAAUGU AGACGUUUUUgcaa cua  
 || |||||||||||| ||||||||||| |||||||||||||| ||| a
 ac ugaUGAGGGAGG AGGGUAUUAUA ucugcaaaaacguu gau  
-  a            C           a              c   u 

Annotation confidence Low

Genome context

3D: 86881594-86881689 [+]

Mature tae-miR1122c-5p

• Accession: MIMAT0056528
• Description: Triticum aestivum tae-miR1122c-5p mature miRNA
• Sequence: 22 - AUAAUGUAAGACGUUUUU - 39
• Evidence: experimental ; unknown

Mature tae-miR1122c-3p

• Accession: MIMAT0035788
• Description: Triticum aestivum tae-miR1122c-3p mature miRNA
• Sequence: 70 - AUAUUAUGGGACGGAGGGAGU - 90
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24734873
   Identification and characterization of microRNAs in the flag leaf and developing seed of wheat (Triticum aestivum L.)
   Han R, Jian C, Lv J, Yan Y, Chi Q, Li Z, Wang Q, Zhang J, Liu X, Zhao H
   BMC Genomics (2014) 15:289