Stem-loop tae-MIR167c

Accession

MI0030399

Description

Triticum aestivum tae-MIR167c precursor miRNA

Literature search

29 open access papers mention tae-MIR167c
(126 sentences)

Sequence

4256591 reads, 53346.0 reads per million, 235 experiments

ccuuugcuggugugagagacUGAAGCUGCCAGCAUGAUCUGcucauccagcaugcgccgaaaccgcguucgguugcgcgggguuaucuuggaauuuuugcuccaucAGAUCAUGCUGCAGCUUCAUUuucucacggccaccaacaga
.(((((.((((((((((((.(((((((((.(((((((((((...((((.((..((((((((......))))).))))).)))).....((((........)))).)))))))))))))))))))).)))))))).)))).))).)).

Structure

c  -   c    -        c         C           -------------------cuc    a  au   -     ac 
 cu uug uggu gugagaga UGAAGCUGC AGCAUGAUCUG                      aucc gc  gcg ccgaa  c
 || ||| |||| |||||||| ||||||||| |||||||||||                      |||| ||  ||| |||||   
 ga aac accg cacucuuU ACUUCGACG UCGUACUAGAc                      uggg cg  cgu ggcuu  g
a  c   c    g        U         -           uaccucguuuuuaagguucuau    g  --   u     gc 

Annotation confidence High

Genome context

6D: 53810988-53811134 [+]

Mature tae-miR167c-5p

• Accession: MIMAT0035789
• Description: Triticum aestivum tae-miR167c-5p mature miRNA
• Sequence: 21 - UGAAGCUGCCAGCAUGAUCUG - 41
• Evidence: experimental ; Illumina [1]

Mature tae-miR397-5p

• Accession: MIMAT0035795
• Description: Triticum aestivum tae-miR397-5p mature miRNA
• Sequence: 107 - AGAUCAUGCUGCAGCUUCAUU - 127
• Evidence: experimental ; Illumina [1]

Mature tae-miR167c-3p

• Accession: MIMAT0061489
• Description: Triticum aestivum tae-miR167c-3p mature miRNA
• Sequence: 107 - AGAUCAUGCUGCAGCUUCAUU - 127
• Evidence: experimental ; unknown

References

1. PubMed ID: 24734873
   Identification and characterization of microRNAs in the flag leaf and developing seed of wheat (Triticum aestivum L.)
   Han R, Jian C, Lv J, Yan Y, Chi Q, Li Z, Wang Q, Zhang J, Liu X, Zhao H
   BMC Genomics (2014) 15:289