Stem-loop tae-MIR1130b

Accession

MI0030406

Description

Triticum aestivum tae-MIR1130b precursor miRNA

Literature search

8 open access papers mention tae-MIR1130b
(17 sentences)

Sequence

47282 reads, 791.0 reads per million, 234 experiments

auuguacucccUCCAUCCCACAAUAUAAGACGuuuuugcaaacuacuugaacaucuuguauaaaacagcuugccaaaacaUCUUAUAUUAUGGGACGGAGGgagcacu
...((.((((((((.(((((.(((((((((.(((((.((((.((..(((.(((...))).)))...)).)))).))))).))))))))).))))).)))))))).)).

Structure

auu  a        A     C         C     u    a  -ac   a   u 
   gu cucccUCC UCCCA AAUAUAAGA Guuuu gcaa cu   uug aca  
   || |||||||| ||||| ||||||||| ||||| |||| ||   ||| ||| c
   ca gagGGAGG AGGGU UUAUAUUCU caaaa cguu ga   aau ugu  
--u  c        C     A         a     c    c  caa   a   u 

Annotation confidence Medium

Genome context

3B: 661444562-661444669 [+]

Mature tae-miR1130b-5p

• Accession: MIMAT0056534
• Description: Triticum aestivum tae-miR1130b-5p mature miRNA
• Sequence: 12 - UCCAUCCCACAAUAUAAGACG - 32
• Evidence: experimental ; unknown

Mature tae-miR1130b-3p

• Accession: MIMAT0035796
• Description: Triticum aestivum tae-miR1130b-3p mature miRNA
• Sequence: 81 - UCUUAUAUUAUGGGACGGAGG - 101
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24734873
   Identification and characterization of microRNAs in the flag leaf and developing seed of wheat (Triticum aestivum L.)
   Han R, Jian C, Lv J, Yan Y, Chi Q, Li Z, Wang Q, Zhang J, Liu X, Zhao H
   BMC Genomics (2014) 15:289