Stem-loop tae-MIR7757

Accession

MI0030410

Description

Triticum aestivum tae-MIR7757 precursor miRNA

Literature search

2 open access papers mention tae-MIR7757
(2 sentences)

Sequence

814296 reads, 9142.0 reads per million, 235 experiments

ugcauuacauAUAAAACCUUCAGCUAUCCAUCUccauaucagccugucucucuuaauuuugaaacauuuuggaaauaugcuuaaauauccuugaacauaagaacgagccacacaugcugcaccaauacuaugaaaaguagcauagaaugaguaaaagaggcucuugacuuuuagaucaugcaagagcuuugaucuacagguaaacccuuuuuuacuaacuacuagcagcuuuaaucugccuucuuaucuauaugauuaguuauuaugucuaaguauguuuuuagaagauuaagcaagcucauucgauauguaaaUGGAUAGUUUGAGGUUUUauuuauaaugau
..(((((...((((((((((.((((((((((...((((((.(..((.((..(((((((........(((((((((((((((((.............(((((((.(.((.......(((((.......(((((........)))))....(((((((((((......((((.(((((((.((....))..))))))).))))....)))))))))))........)))))........))))))))))..(((((((.....))))))).))))))))))))))))))))))))..))..))..)))))))...)))))))))).))))))))))...)))))..

Structure

ug     cau          C          CUc      a cc  -u  cu       uugaaaca                 ---------aauauccuugaac       c a  -cacacau     accaauacuaugaaaaguagcauagaaug           cucuug    u       -u  a 
  cauua   AUAAAACCUU AGCUAUCCAU   cauauc g  ug  cu  cuuaauu        uuuuggaaauaugcuua                      auaagaa g gc        gcugc                             aguaaaagagg      acuu uagauca  gc a
  |||||   |||||||||| ||||||||||   |||||| |  ||  ||  |||||||        |||||||||||||||||                      ||||||| | ||        |||||                             |||||||||||      |||| |||||||  ||  
  guaau   uaUUUUGGAG UUGAUAGGUa   guauag c  ac  ga  gaauuag        aagauuuuuguaugaau                      uauucuu c cg        cgacg                             ucauuuuuucc      ugga aucuagu  cg g
ua     auu          U          aau      - uu  uc  ac       --------                 cuguauuauugauuaguauauc       - -  ucuaauuu     ---------------------aucaucaa           --caaa    c       uu  a 

Annotation confidence Medium

Genome context

3D: 111891336-111891679 [-]

Mature tae-miR7757-5p

• Accession: MIMAT0035800
• Description: Triticum aestivum tae-miR7757-5p mature miRNA
• Sequence: 11 - AUAAAACCUUCAGCUAUCCAUCU - 33
• Evidence: experimental ; Illumina [1]

Mature tae-miR7757-3p

• Accession: MIMAT0056537
• Description: Triticum aestivum tae-miR7757-3p mature miRNA
• Sequence: 315 - UGGAUAGUUUGAGGUUUU - 332
• Evidence: experimental ; unknown

References

1. PubMed ID: 24734873
   Identification and characterization of microRNAs in the flag leaf and developing seed of wheat (Triticum aestivum L.)
   Han R, Jian C, Lv J, Yan Y, Chi Q, Li Z, Wang Q, Zhang J, Liu X, Zhao H
   BMC Genomics (2014) 15:289