Stem-loop tae-MIR5048

Accession

MI0030413

Description

Triticum aestivum tae-MIR5048 precursor miRNA

Literature search

6 open access papers mention tae-MIR5048
(8 sentences)

Sequence

2599465 reads, 12973 reads per million, 116 experiments

ucuagcaauauaUUUGCAGGUUUUAGGUCUAAGUggugaauaucgaucucugaauauauugauaaccuucacaaauuugcugauuauuuuguagagcuauuauugucccacaugcauauccaugacuaaaaaaagcaaaaaaguaauaauuggguguuguguucucacaaagaaagauggaaaaguuuaacaaaaacuugugaaggaagaugaaugcuuugauuaugcaugaauccauaaugauaaagugcuauugaaugaucaaguaauuuguaagguuuuuauuaucuucgcaagaguuguauuguuaauuuagaccuagacaugcaaguauauuucuagg
.((((.((((((((((((.((((.((((((((((....((((.(((.(((((((.(((.(((.((((((.(((((((.(((((((((((.((((.(((((((((((....(((((((((((((..((((.....((......)).....))))...(((((....)))))......))))).((((((.....))))))((.((((..........)))).)))))))))).....))))))))..))).)))).)))))))).)))))))))))))))).))).))).)))...)))))))))))....)))))))))))))).)))))))))))).)))).

Structure

u    c            G    U          ggug    u   u    ---   u   u   u      c       u   -        u    a   --        -ccca        ------------------------------------------     ---------------------ga    aaaaa  aa 
 cuag aauauaUUUGCA GUUU AGGUCUAAGU    aaua cga cucu   gaa aua uga aaccuu acaaauu gcu gauuauuu guag gcu  auuauugu     caugcaua                                          uccau                       cuaa     gc  a
 |||| |||||||||||| |||| ||||||||||    |||| ||| ||||   ||| ||| ||| |||||| ||||||| ||| |||||||| |||| |||  ||||||||     ||||||||                                          |||||                       ||||     ||   
 gauc uuauaugaacgu caga uccagauuua    uuau guu gaga   cuu uau auu uuggaa uguuuaa uga cuaguaag uauc uga  uaguaaua     guacguau                                          aggua                       gguu     ug  a
g    u            a    -          auug    -   -    acg   c   u   u      -       -   a        u    g   aa        ccuaa        uaguuucguaaguagaaggaaguguucaaaaacaauuugaaa     gaaagaaacacucuuguguugug    aauaa  aa 

Annotation confidence High

Genome context

Unknown

Mature tae-miR5048-5p

• Accession: MIMAT0035803
• Description: Triticum aestivum tae-miR5048-5p mature miRNA
• Sequence: 13 - UUUGCAGGUUUUAGGUCUAAGU - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24734873
   Identification and characterization of microRNAs in the flag leaf and developing seed of wheat (Triticum aestivum L.)
   Han R, Jian C, Lv J, Yan Y, Chi Q, Li Z, Wang Q, Zhang J, Liu X, Zhao H
   BMC Genomics (2014) 15:289