Stem-loop tae-MIR9678

Accession

MI0030415

Description

Triticum aestivum tae-MIR9678 precursor miRNA

Literature search

1 open access papers mention tae-MIR9678
(2 sentences)

Sequence

319341 reads, 10148.0 reads per million, 48 experiments

cguaggaucaUCUGGCGAGGGACAUACACUGUacaagugaaucgcggcgcgcccugcggccugUACAGUUUAUGUCCCCGGCAGacgaucuacga
(((((.(((.((((.((.((((((((.((((((((.((....(((((......))))))).)))))))).)))))))))).)))).)))))))).

Structure

-     g   a    G  A        C        a  gaau     cg 
 cguag auc UCUG CG GGGACAUA ACUGUaca gu    cgcgg  c
 ||||| ||| |||| || |||||||| |||||||| ||    |||||   
 gcauc uag aGAC GC CCCUGUAU UGACAUgu cg    gcguc  g
a     -   c    G  -        U        c  ----     cc 

Annotation confidence Medium

Genome context

7D: 232631192-232631286 [-]

Mature tae-miR9678-5p

• Accession: MIMAT0061492
• Description: Triticum aestivum tae-miR9678-5p mature miRNA
• Sequence: 11 - UCUGGCGAGGGACAUACACUGU - 32
• Evidence: experimental ; unknown

Mature tae-miR9678-3p

• Accession: MIMAT0035805
• Description: Triticum aestivum tae-miR9678-3p mature miRNA
• Sequence: 64 - UACAGUUUAUGUCCCCGGCAG - 84
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24734873
   Identification and characterization of microRNAs in the flag leaf and developing seed of wheat (Triticum aestivum L.)
   Han R, Jian C, Lv J, Yan Y, Chi Q, Li Z, Wang Q, Zhang J, Liu X, Zhao H
   BMC Genomics (2014) 15:289