Stem-loop tae-MIR6197

Accession

MI0030416

Description

Triticum aestivum tae-MIR6197 precursor miRNA

Literature search

3 open access papers mention tae-MIR6197
(5 sentences)

Sequence

6569 reads, 114.0 reads per million, 224 experiments

aaguacucccUCUGUAAACAAAUGUAGGACGUuuuugcaguuuaaauuaaacugcuaaaacaucUUACAUUUGUGUACAGAGGGAauauau
..(((.((((((((((.((((((((((((.(((((.((((((((...)))))))).))))).)))))))))))).)))))))))).)))..

Structure

aa   c          A            C     u        a 
  gua ucccUCUGUA ACAAAUGUAGGA GUuuu gcaguuua  
  ||| |||||||||| |||||||||||| ||||| |||||||| a
  uau AGGGAGACAU UGUUUACAUUcu caaaa cgucaaau  
ua   a          G            a     u        u 

Annotation confidence High

Genome context

1A: 142658741-142658831 [-]

Mature tae-miR6197-5p

• Accession: MIMAT0035806
• Description: Triticum aestivum tae-miR6197-5p mature miRNA
• Sequence: 11 - UCUGUAAACAAAUGUAGGACGU - 32
• Evidence: experimental ; Illumina [1]

Mature tae-miR6197-3p

• Accession: MIMAT0061493
• Description: Triticum aestivum tae-miR6197-3p mature miRNA
• Sequence: 65 - UUACAUUUGUGUACAGAGGGA - 85
• Evidence: experimental ; unknown

References

1. PubMed ID: 24734873
   Identification and characterization of microRNAs in the flag leaf and developing seed of wheat (Triticum aestivum L.)
   Han R, Jian C, Lv J, Yan Y, Chi Q, Li Z, Wang Q, Zhang J, Liu X, Zhao H
   BMC Genomics (2014) 15:289