Stem-loop tae-MIR5049

Accession

MI0030419

Description

Triticum aestivum tae-MIR5049 precursor miRNA

Literature search

8 open access papers mention tae-MIR5049
(13 sentences)

Sequence

75989 reads, 638.0 reads per million, 230 experiments

acggaaggauguacuuccuccaauccguauuacuuauCUUAGAUUUGUCUAGAUACauacauuuauacaaauuuaagacgaauAAUAUGGAUCGGAGGGAGUACcugauaauaa
..........(((((((((((.((((((((((.((.((((((((((((.(((((......))))).)))))))))))).)).)))))))))).)))))))))))..........

Structure

acggaaggau           a          c  a            C     AC 
          guacuuccucc auccguauua uu uCUUAGAUUUGU UAGAU  a
          ||||||||||| |||||||||| || |||||||||||| |||||   
          CAUGAGGGAGG UAGGUAUAAu ag agaauuuaaaca auuua  u
aauaauaguc           C          a  c            u     ca 

Annotation confidence Low

Genome context

Unknown

Mature tae-miR5049-5p

• Accession: MIMAT0056543
• Description: Triticum aestivum tae-miR5049-5p mature miRNA
• Sequence: 38 - CUUAGAUUUGUCUAGAUAC - 56
• Evidence: experimental ; unknown

Mature tae-miR5049-3p

• Accession: MIMAT0035809
• Description: Triticum aestivum tae-miR5049-3p mature miRNA
• Sequence: 84 - AAUAUGGAUCGGAGGGAGUAC - 104
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24734873
   Identification and characterization of microRNAs in the flag leaf and developing seed of wheat (Triticum aestivum L.)
   Han R, Jian C, Lv J, Yan Y, Chi Q, Li Z, Wang Q, Zhang J, Liu X, Zhao H
   BMC Genomics (2014) 15:289