miRBase entry: oha-let-7a-1

Stem-loop oha-let-7a-1

Accession

MI0031299

Description

Ophiophagus hannah oha-let-7a-1 precursor miRNA

Sequence

uucugugggaUGAGGUAGUAGGUUGUAUAGUUuuagggucauacccaccacugggagauaacuauacagucuacugucuuuccuaagga
.(((.(((((.(((((((((((((((((((((.....(((...((((....)))).))))))))))))))))))))))))))))).)))

Structure

u   g     U                     uuagg   aua    c 
 ucu uggga GAGGUAGUAGGUUGUAUAGUU     guc   ccca c
 ||| ||||| |||||||||||||||||||||     |||   ||||  
 agg auccu uucugucaucugacauaucaa     uag   gggu a
-   a     -                     -----   --a    c

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

AZIM01001439.1: 259612-259700 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from oha-let-7a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oha-let-7a

Accession	MIMAT0036625
Description	Ophiophagus hannah oha-let-7a mature miRNA
Sequence	11 - UGAGGUAGUAGGUUGUAUAGUU - 32
Evidence	not_experimental

References

PubMed ID: 24297900
The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
"Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wuster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pl"
"Proc Natl Acad Sci U S A (2013) 110:20651-20656