miRBase entry: oha-let-7c-1

Stem-loop oha-let-7c-1

Accession

MI0031302

Description

Ophiophagus hannah oha-let-7c-1 precursor miRNA

Sequence

aagcUGAGGUAGUAGGUUGUAUGGUUuagaauuacaccaagggagauaaCUGUACAGCCUCCUAGCUUUCCuugggu
(((..(((.(((.(((((((((((((.....................))))))))))))).))).)))..)))....

Structure

----   cU   G   U             uagaauuac 
    aag  GAG UAG AGGUUGUAUGGUU         a
    |||  ||| ||| |||||||||||||         c
    uuC  UUC AUC UCCGACAUGUCaa         c
uggg   CU   G   C             uagagggaa

Annotation confidence Not enough data

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Genome context

AZIM01002460.1: 20608-20684 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from oha-let-7c-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oha-let-7c-5p

Accession	MIMAT0036630
Description	Ophiophagus hannah oha-let-7c-5p mature miRNA
Sequence	5 - UGAGGUAGUAGGUUGUAUGGUU - 26
Evidence	not_experimental

Mature oha-let-7c-1-3p

Accession	MIMAT0036631
Description	Ophiophagus hannah oha-let-7c-1-3p mature miRNA
Sequence	50 - CUGUACAGCCUCCUAGCUUUCC - 71
Evidence	not_experimental

References

PubMed ID: 24297900
The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
"Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wuster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pl"
"Proc Natl Acad Sci U S A (2013) 110:20651-20656