miRBase entry: oha-mir-100

Stem-loop oha-mir-100

Accession

MI0031313

Description

Ophiophagus hannah oha-mir-100 precursor miRNA

Sequence

ccugccgguugccacaAACCCGUAGAUCCGAACUUGUGCUccuauccuACACAAGCUUGUAUCUAUAGGUaugugucugcuugg
....(((((.(.((((.(((.((((((.(((.((((((...........)))))).))).)))))).))).)))).).)).)))

Structure

ccug   -  u c    A   C      C   A      CUcc 
    ccg gu g caca ACC GUAGAU CGA CUUGUG    u
    ||| || | |||| ||| |||||| ||| ||||||    a
    ggu cg c gugu UGG UAUCUA GUU GAACAC    u
----   u  u u    a   A      U   C      Aucc

Annotation confidence Not enough data

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Genome context

AZIM01002460.1: 28414-28497 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from oha-mir-100

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oha-miR-100-5p

Accession	MIMAT0036648
Description	Ophiophagus hannah oha-miR-100-5p mature miRNA
Sequence	17 - AACCCGUAGAUCCGAACUUGUGCU - 40
Evidence	not_experimental

Mature oha-miR-100-3p

Accession	MIMAT0036649
Description	Ophiophagus hannah oha-miR-100-3p mature miRNA
Sequence	49 - ACACAAGCUUGUAUCUAUAGGU - 70
Evidence	not_experimental

References

PubMed ID: 24297900
The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
"Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wuster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pl"
"Proc Natl Acad Sci U S A (2013) 110:20651-20656