miRBase entry: oha-mir-16b

Stem-loop oha-mir-16b

Accession

MI0031369

Description

Ophiophagus hannah oha-mir-16b precursor miRNA

Sequence

acuuguuccgcugUAGCAGCACGUAAAUAUUGGUGuaguaaagauaacgCCAAUAUUAUUGUGCUGCUUaagugugacaggga
.((((((.((((..(((((((((..(((((((((((.((....)).)))))))))))..)))))))))..)))).))))))..

Structure

-a      c    gU         UA           a  a 
  cuuguu cgcu  AGCAGCACG  AAUAUUGGUGu gu a
  |||||| ||||  |||||||||  ||||||||||| ||  
  ggacag guga  UCGUCGUGU  UUAUAACCgca ua a
ag      u    aU         UA           a  g

Annotation confidence Not enough data

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Genome context

AZIM01000178.1: 249110-249192 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from oha-mir-16b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oha-miR-16b-5p

Accession	MIMAT0036746
Description	Ophiophagus hannah oha-miR-16b-5p mature miRNA
Sequence	14 - UAGCAGCACGUAAAUAUUGGUG - 35
Evidence	not_experimental

Mature oha-miR-16b-3p

Accession	MIMAT0036747
Description	Ophiophagus hannah oha-miR-16b-3p mature miRNA
Sequence	50 - CCAAUAUUAUUGUGCUGCUU - 69
Evidence	not_experimental

References

PubMed ID: 24297900
The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
"Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wuster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pl"
"Proc Natl Acad Sci U S A (2013) 110:20651-20656