miRBase entry: oha-mir-1d

Stem-loop oha-mir-1d

Accession

MI0031399

Description

Ophiophagus hannah oha-mir-1d precursor miRNA

Sequence

agucuACAUACUUCUUCAUAUGCCCAUAuggagucggcuggcuaUGGAAUGUUAAGAAGUAUGUAucuuug
....((((((((((((.((((..((((....((((....)))))))).)))).))))))))))))......

Structure

--aguc            C    GC    Augg    g 
      uACAUACUUCUU AUAU  CCAU    aguc g
      |||||||||||| ||||  ||||    ||||  
      AUGUAUGAAGAA UGUA  GGUa    ucgg c
guuucu            U    -A    ----    u

Annotation confidence Not enough data

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Genome context

AZIM01000323.1: 267115-267185 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oha-mir-1d

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oha-miR-1d-5p

Accession	MIMAT0036803
Description	Ophiophagus hannah oha-miR-1d-5p mature miRNA
Sequence	6 - ACAUACUUCUUCAUAUGCCCAUA - 28
Evidence	not_experimental

Mature oha-miR-1d-3p

Accession	MIMAT0036804
Description	Ophiophagus hannah oha-miR-1d-3p mature miRNA
Sequence	45 - UGGAAUGUUAAGAAGUAUGUA - 65
Evidence	not_experimental

References

PubMed ID: 24297900
The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
"Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wuster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pl"
"Proc Natl Acad Sci U S A (2013) 110:20651-20656