miRBase entry: oha-mir-216

Stem-loop oha-mir-216

Accession

MI0031417

Description

Ophiophagus hannah oha-mir-216 precursor miRNA

Sequence

cauagauggcugugaauugguuUAAUCUCAGCUGGCAACUGUGAGcaguuaauaaauccucuCACAGUGGUAUCUGGGAUUAUacuaaacacagcaauuuccgugcu
(((.((..((((((..(((((.(((((((((.((.((.(((((((.((..........))))))))))).)).))))))))).))))).))))))....)).)))..

Structure

--   a  --ug      aa     u         C  G  A       c  uuaa 
  cau ga    gcugug  uuggu UAAUCUCAG UG CA CUGUGAG ag    u
  ||| ||    ||||||  ||||| ||||||||| || || ||||||| ||     
  gug cu    cgacac  aauca AUUAGGGUC AU GU GACACuc uc    a
uc   c  uuaa      -a     U         U  G  -       -  cuaa

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

AZIM01000377.1: 298835-298941 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from oha-mir-216

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oha-miR-216-5p

Accession	MIMAT0036833
Description	Ophiophagus hannah oha-miR-216-5p mature miRNA
Sequence	23 - UAAUCUCAGCUGGCAACUGUGAG - 45
Evidence	not_experimental

Mature oha-miR-216-3p

Accession	MIMAT0036834
Description	Ophiophagus hannah oha-miR-216-3p mature miRNA
Sequence	63 - CACAGUGGUAUCUGGGAUUAU - 83
Evidence	not_experimental

References

PubMed ID: 24297900
The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
"Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wuster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pl"
"Proc Natl Acad Sci U S A (2013) 110:20651-20656