miRBase entry: oha-mir-222a

Stem-loop oha-mir-222a

Accession

MI0031427

Description

Ophiophagus hannah oha-mir-222a precursor miRNA

Sequence

cucaucagucGCUCAGUAGUCAGUGUAGAUucuguuucuucagcagucagcAGCUACAUCUGGCUACUGGGUCUCugaagacaucuuguagcagcuu
.((.((((..((((((((((((((((((...(((((.((.....))..)))))))))).)))))))))))))..)))).))................

Structure

---------------c  a    uc             -     AUu     -u  u 
                uc ucag  GCUCAGUAGUCAG UGUAG   cuguu  cu c
                || ||||  ||||||||||||| |||||   |||||  || a
                ag aguC  UGGGUCAUCGGUC ACAUC   GAcga  ga g
uucgacgauguucuac  a    UC             U     ---     cu  c

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

AZIM01002126.1: 55630-55726 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from oha-mir-222a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oha-miR-222a-5p

Accession	MIMAT0036848
Description	Ophiophagus hannah oha-miR-222a-5p mature miRNA
Sequence	11 - GCUCAGUAGUCAGUGUAGAU - 30
Evidence	not_experimental

Mature oha-miR-222a-3p

Accession	MIMAT0036849
Description	Ophiophagus hannah oha-miR-222a-3p mature miRNA
Sequence	52 - AGCUACAUCUGGCUACUGGGUCUC - 75
Evidence	not_experimental

References

PubMed ID: 24297900
The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
"Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wuster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pl"
"Proc Natl Acad Sci U S A (2013) 110:20651-20656