miRBase entry: oha-mir-23a

Stem-loop oha-mir-23a

Accession

MI0031430

Description

Ophiophagus hannah oha-mir-23a precursor miRNA

Sequence

cugcugcugcugccugcuGGGGUUCCUGGUGAUGUGAUUUuaccuugauguucagaAUCACAUUGCCAGGGAUUUCCAacuguuggc
..((....)).(((.((((((((((((((((((((((((((((......))..))))))))))))))))))).)))))...)).)))

Structure

cugcugcugcu   u  ---     -                   --  cu 
           gcc gc   uGGGG UUCCUGGUGAUGUGAUUUu  ac  u
           ||| ||   ||||| |||||||||||||||||||  ||   
           cgg ug   ACCUU AGGGACCGUUACACUAaga  ug  g
-----------   u  uca     U                   cu  ua

Annotation confidence Not enough data

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Genome context

AZIM01000021.1: 587507-587593 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from oha-mir-23a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oha-miR-23a-5p

Accession	MIMAT0036854
Description	Ophiophagus hannah oha-miR-23a-5p mature miRNA
Sequence	19 - GGGGUUCCUGGUGAUGUGAUUU - 40
Evidence	not_experimental

Mature oha-miR-23a-3p

Accession	MIMAT0036855
Description	Ophiophagus hannah oha-miR-23a-3p mature miRNA
Sequence	57 - AUCACAUUGCCAGGGAUUUCCA - 78
Evidence	not_experimental

References

PubMed ID: 24297900
The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
"Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wuster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pl"
"Proc Natl Acad Sci U S A (2013) 110:20651-20656