miRBase entry: oha-mir-301b

Stem-loop oha-mir-301b

Accession

MI0031447

Description

Ophiophagus hannah oha-mir-301b precursor miRNA

Sequence

gccacugcuggaaccgccgGCUCUGACAAUAUUGCACUACUguuuaucucaaauuuagCAGUGCAAUAAUAUUGUCAAAGCAUuugguuccaguucuga
..((..((((((((((...(((.(((((((((((((((.(((.............))).))))))...))))))))).)))...))))))))))..)).

Structure

gc  cu          ccg   C         ---      A   uuuau 
  ca  gcuggaaccg   GCU UGACAAUAU   UGCACU CUg     c
  ||  ||||||||||   ||| |||||||||   |||||| |||     u
  gu  ugaccuuggu   CGA ACUGUUAUA   ACGUGA gau     c
-a  cu          uUA   A         AUA      C   uuaaa

Annotation confidence Not enough data

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Genome context

AZIM01005047.1: 53445-53543 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from oha-mir-301b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oha-miR-301b-5p

Accession	MIMAT0036882
Description	Ophiophagus hannah oha-miR-301b-5p mature miRNA
Sequence	20 - GCUCUGACAAUAUUGCACUACU - 41
Evidence	not_experimental

Mature oha-miR-301b-3p

Accession	MIMAT0036883
Description	Ophiophagus hannah oha-miR-301b-3p mature miRNA
Sequence	59 - CAGUGCAAUAAUAUUGUCAAAGCAU - 83
Evidence	not_experimental

References

PubMed ID: 24297900
The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
"Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wuster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pl"
"Proc Natl Acad Sci U S A (2013) 110:20651-20656