Stem-loop oha-mir-875

Accession

MI0031486

Description

Ophiophagus hannah oha-mir-875 precursor miRNA

Sequence

auuuguuuagugguacAAUACCUCAGCCUUAUCAGGUgcuguauauauauucaCCUGGAAGUUCUGAGGUUaaguuucacugaacaugag
...((((((((((.((...(((((((.(((.(((((((..(((....))).))))))))))..)))))))...)).))))))))))....

Structure

-auu          u  AAU       -C   A       cu   u 
    uguuuagugg ac   ACCUCAG  CUU UCAGGUg  gua a
    |||||||||| ||   |||||||  ||| |||||||  |||  
    acaagucacu ug   UGGAGUC  GAA GGUCCac  uau u
gagu          u  aaU       UU   -       -u   a 

Annotation confidence Not enough data

Genome context

AZIM01000686.1: 88441-88530 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from oha-mir-875

Mature oha-miR-875-5p

• Accession: MIMAT0036951
• Description: Ophiophagus hannah oha-miR-875-5p mature miRNA
• Sequence: 17 - AAUACCUCAGCCUUAUCAGGU - 37
• Evidence: not_experimental

Mature oha-miR-875-3p

• Accession: MIMAT0036952
• Description: Ophiophagus hannah oha-miR-875-3p mature miRNA
• Sequence: 54 - CCUGGAAGUUCUGAGGUU - 71
• Evidence: not_experimental

References

1. PubMed ID: 24297900
   The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
   "Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wuster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pl"
   "Proc Natl Acad Sci U S A (2013) 110:20651-20656