miRBase entry: oha-mir-99a

Stem-loop oha-mir-99a

Accession

MI0031495

Description

Ophiophagus hannah oha-mir-99a precursor miRNA

Sequence

gagugccaauuggcauaAACCCGUAGAUCCGAUCUUGUGgugaaauacugugcaCAAGCUCGUUUCUAUGGGUCAGugucagucugguga
....((((((((((((..(((((((((..(((.((((((.............)))))).)))..)))))))))..)))))))).))))..

Structure

gagu    -        aA         UC   U      gugaa 
    gcca auuggcau  ACCCGUAGA  CGA CUUGUG     a
    |||| ||||||||  |||||||||  ||| ||||||     u
    uggu ugacuguG  UGGGUAUCU  GCU GAACac     a
--ag    c        AC         UU   C      guguc

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

AZIM01000064.1: 967763-967852 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oha-mir-99a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oha-miR-99a-5p

Accession	MIMAT0036964
Description	Ophiophagus hannah oha-miR-99a-5p mature miRNA
Sequence	18 - AACCCGUAGAUCCGAUCUUGUG - 39
Evidence	not_experimental

Mature oha-miR-99a-3p

Accession	MIMAT0036965
Description	Ophiophagus hannah oha-miR-99a-3p mature miRNA
Sequence	55 - CAAGCUCGUUUCUAUGGGUCAG - 76
Evidence	not_experimental

References

PubMed ID: 24297900
The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
"Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wuster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pl"
"Proc Natl Acad Sci U S A (2013) 110:20651-20656