Stem-loop cre-MIR9897

Accession

MI0031825

Description

Chlamydomonas reinhardtii cre-MIR9897 precursor miRNA

Sequence

1439371 reads, 69551.0 reads per million, 51 experiments

agaaggacguggacguggauGCCGAUAAGAAGGAGCCGUAAgguaccgggcguggggagggcaggggcagggacggggaucaggggcagcugauccccgucccugccccugcccuccccgcgcccgguaccUUACGGCUCCUUCUUAUCGGCacaggguuuccgggcucugg
...(((.(.(((((.((..((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((......)))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))).)...)))).).)))..

Structure

aga   a g    --- g  ga                                                                gg 
   agg c ugga   c ug  uGCCGAUAAGAAGGAGCCGUAAgguaccgggcguggggagggcaggggcagggacggggaucag  g
   ||| | ||||   | ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
   ucu g gccu   g ac  aCGGCUAUUCUUCCUCGGCAUUccauggcccgcgccccucccguccccgucccugccccuaguc  c
-gg   c g    uug g  --                                                                ga 

Annotation confidence High

Comments

This sequence was incorrectly named MIR1174 in [1].

Genome context

ref|NC_057013.1|: 3399852-3400023 [-]

Mature cre-miR9897-5p

• Accession: MIMAT0037303
• Description: Chlamydomonas reinhardtii cre-miR9897-5p mature miRNA
• Sequence: 21 - GCCGAUAAGAAGGAGCCGUAA - 41
• Evidence: experimental ; Illumina [1]

Mature cre-miR9897-3p

• Accession: MIMAT0037304
• Description: Chlamydomonas reinhardtii cre-miR9897-3p mature miRNA
• Sequence: 132 - UUACGGCUCCUUCUUAUCGGC - 152
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24127635
   Complementarity to an miRNA seed region is sufficient to induce moderate repression of a target transcript in the unicellular green alga Chlamydomonas reinhardtii
   "Yamasaki T, Voshall A, Kim EJ, Moriyama E, Cerutti H, Ohama T"
   "Plant J (2013) 76:1045-1056