Stem-loop cgr-mir-194-2

Accession

MI0033062

Description

Cricetulus griseus cgr-mir-194-2 precursor miRNA

Sequence

81253 reads, 280.0 reads per million, 55 experiments

uggcugccacccccUGUAACAGCAACUCCAUGUGGAagugcccacuaguuCCAGUGGGGCUGCUGUUAUCUGggguggaggcugg
.((((.(((((((..(((((((((.((((((.(((((.((.....)).))))))))))).)))))))))..))))))).))))..

Structure

-u    g       cU         A      G     g  c 
  ggcu ccacccc  GUAACAGCA CUCCAU UGGAa ug c
  |||| |||||||  ||||||||| |||||| ||||| || c
  ucgg ggugggG  UAUUGUCGU GGGGUG ACCuu au a
gg    a       UC         C      -     g  c 

Annotation confidence High

Genome context

JH001367.1: 289932-290016 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cgr-mir-194-2

Mature cgr-miR-194-5p

• Accession: MIMAT0023827
• Description: Cricetulus griseus cgr-miR-194-5p mature miRNA
• Sequence: 15 - UGUAACAGCAACUCCAUGUGGA - 36
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-194-2-3p

• Accession: MIMAT0052443
• Description: Cricetulus griseus cgr-miR-194-2-3p mature miRNA
• Sequence: 51 - CCAGUGGGGCUGCUGUUAUCUG - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25689160
   Annotation of additional evolutionary conserved microRNAs in CHO cells from updated genomic data
   "Diendorfer AB, Hackl M, Klanert G, Jadhav V, Reithofer M, Stiefel F, Hesse F, Grillari J, Borth N"
   "Biotechnol Bioeng (2015) 112:1488-1493