Stem-loop cgr-mir-30c-1

Accession

MI0033091

Description

Cricetulus griseus cgr-mir-30c-1 precursor miRNA

Literature search

1 open access papers mention cgr-mir-30c-1
(3 sentences)

Sequence

494324 reads, 2183.0 reads per million, 55 experiments

accauguuguagugugUGUAAACAUCCUACACUCUCAGCUgugagcucaagguggCUGGGAGAGGGUUGUUUACUCCUucugccaugga
.(((((..((((...(.(((((((.(((...(((((((((....(((...)))))))))))).))).))))))).)...))))))))).

Structure

a     uu    ugu U       U   ACA         guga   c 
 ccaug  guag   g GUAAACA CCU   CUCUCAGCU    gcu  
 |||||  ||||   | ||||||| |||   |||||||||    ||| a
 gguac  cguc   C CAUUUGU GGG   GAGGGUCgg    ugg  
a     --    uUC U       U   --A         ----   a 

Annotation confidence High

Genome context

JH000283.1: 441797-441885 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cgr-mir-30c-1

Mature cgr-miR-30c-5p

• Accession: MIMAT0052503
• Description: Cricetulus griseus cgr-miR-30c-5p mature miRNA
• Sequence: 17 - UGUAAACAUCCUACACUCUCAGCU - 40
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-30c-1-3p

• Accession: MIMAT0052459
• Description: Cricetulus griseus cgr-miR-30c-1-3p mature miRNA
• Sequence: 56 - CUGGGAGAGGGUUGUUUACUCCU - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25689160
   Annotation of additional evolutionary conserved microRNAs in CHO cells from updated genomic data
   "Diendorfer AB, Hackl M, Klanert G, Jadhav V, Reithofer M, Stiefel F, Hesse F, Grillari J, Borth N"
   "Biotechnol Bioeng (2015) 112:1488-1493