Stem-loop aga-mir-10378

Accession

MI0033387

Description

Anopheles gambiae aga-mir-10378 precursor miRNA

Literature search

1 open access papers mention aga-mir-10378
(1 sentences)

Sequence

1681 reads, 78.0 reads per million, 24 experiments

ccggugaucgguuuCGUGGUACUCUUGUGGUAAGGAguuucgcacuagcggcggcaccaagcaucUCUAUCAUUUGAGUACCAUGAAgucggcacugg
((((((.(((((((((((((((((..((((((.((((((((((.......)))).....))).))).))))))..)))))))))))))))))))))))

Structure

      a                 UU      A   -   -----    ac 
ccggug ucgguuuCGUGGUACUC  GUGGUA GGA guu     ucgc  u
|||||| |||||||||||||||||  |||||| ||| |||     ||||  a
ggucac ggcugAAGUACCAUGAG  UACUAU Ucu cga     ggcg  g
      -                 UU      C   a   accac    gc 

Annotation confidence High

Genome context

ref|NC_064601.1|: 18576503-18576600 [-]

Mature aga-miR-10378-5p

• Accession: MIMAT0041582
• Description: Anopheles gambiae aga-miR-10378-5p mature miRNA
• Sequence: 15 - CGUGGUACUCUUGUGGUAAGGA - 36
• Evidence: experimental ; Illumina [1]

Mature aga-miR-10378-3p

• Accession: MIMAT0041583
• Description: Anopheles gambiae aga-miR-10378-3p mature miRNA
• Sequence: 66 - UCUAUCAUUUGAGUACCAUGAA - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25766668
   The germline of the malaria mosquito produces abundant miRNAs, endo-siRNAs, piRNAs and 29-nt small RNAs
   Castellano L, Rizzi E, Krell J, Di Cristina M, Galizi R, Mori A, Tam J, De Bellis G, Stebbing J, Crisanti A, Nolan T
   BMC Genomics (2015) 16:100