Stem-loop sfr-mir-10471

Accession

MI0033571

Description

Spodoptera frugiperda sfr-mir-10471 precursor miRNA

Literature search

1 open access papers mention sfr-mir-10471
(1 sentences)

Sequence

1271 reads, 76.0 reads per million, 41 experiments

uaaacgagaccgcgUCCGGUGCUCUGAUUGGUUACUUUauacaugcaaugauaUAGGCCAAUCUGAACCCUGUAUgagcucucguuua
(((((((((.(.(((.(((.(.((.(((((((..((.(((.(((...)))))).))))))))).)).).))).))).).)))))))))

Structure

         c g   C   U C  U       UA  U   a   g 
uaaacgaga c cgU CGG G UC GAUUGGU  CU Uau cau  
||||||||| | ||| ||| | || |||||||  || ||| ||| c
auuugcucu g gUA GUC C AG CUAACCG  GA aua gua  
         c a   U   C A  U       --  U   -   a 

Annotation confidence Medium

Genome context

JQCY02003872.1: 7015-7102 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from sfr-mir-10471

Mature sfr-miR-10471-5p

• Accession: MIMAT0041824
• Description: Spodoptera frugiperda sfr-miR-10471-5p mature miRNA
• Sequence: 15 - UCCGGUGCUCUGAUUGGUUACUUU - 38
• Evidence: experimental ; Illumina [1]

Mature sfr-miR-10471-3p

• Accession: MIMAT0041825
• Description: Spodoptera frugiperda sfr-miR-10471-3p mature miRNA
• Sequence: 54 - UAGGCCAAUCUGAACCCUGUAU - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25693181
   Identification and characteristics of microRNAs from army worm, Spodoptera frugiperda cell line Sf21
   Kakumani PK, Chinnappan M, Singh AK, Malhotra P, Mukherjee SK, Bhatnagar RK
   PLoS One (2015) 10:e0116988