Stem-loop sfr-mir-2b

Accession

MI0033599

Description

Spodoptera frugiperda sfr-mir-2b precursor miRNA

Literature search

3 open access papers mention sfr-mir-2b
(4 sentences)

Sequence

526136 reads, 26382.0 reads per million, 42 experiments

cggcgCUCACAAAGUGGCUGUAAUGUGUGuccccguacauaUCACAGCCAGCUUUGAUGAGCgcug
(((((((((((((((((((((.(((((((......))))))).))))))).))))).)))))))))

Structure

         -     -       A       uc 
cggcgCUCA CAAAG UGGCUGU AUGUGUG  c
||||||||| ||||| ||||||| |||||||   
gucgCGAGU GUUUC ACCGACA Uauacau  c
         A     G       C       gc 

Annotation confidence High

Genome context

JQCY02000649.1: 55212-55277 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from sfr-mir-2b

Mature sfr-miR-2b-5p

• Accession: MIMAT0041876
• Description: Spodoptera frugiperda sfr-miR-2b-5p mature miRNA
• Sequence: 6 - CUCACAAAGUGGCUGUAAUGUGUG - 29
• Evidence: experimental ; Illumina [1]

Mature sfr-miR-2b-3p

• Accession: MIMAT0041877
• Description: Spodoptera frugiperda sfr-miR-2b-3p mature miRNA
• Sequence: 42 - UCACAGCCAGCUUUGAUGAGC - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25693181
   Identification and characteristics of microRNAs from army worm, Spodoptera frugiperda cell line Sf21
   Kakumani PK, Chinnappan M, Singh AK, Malhotra P, Mukherjee SK, Bhatnagar RK
   PLoS One (2015) 10:e0116988